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One of the key problems of mechanics of composite materials is an estimation of effective properties of composite materials. This article describes the algorithms for numerical evaluation of the effective thermal conductivity and thermal expansion of composites. An algorithm of effective thermal conductivity evaluation is based on sequential solution of boundary problems of thermal conductivity with different boundary conditions (in the form of the temperature on the boundary) on representative volume element (RVE) of composite with subsequent averaging of the resulting vector field of heat flux. An algorithm of effective thermal expansion evaluation is based on the solution of the boundary problem of elasticity (considering the thermal expansion) on a RVE of composite material with subsequent averaging of a resulting strain tensor field. Numerical calculations were performed with the help of Fidesys Composite software module of CAE Fidesys using the finite element method. The article presents the results of numerical calculations of the effective coefficients of thermal conductivity and thermoelasticity for two types of composites (single-layer fiber and particulate materials) in comparison with the analytical estimates. The comparison leads to the conclusion about the correctness of algorithms and program developed.