3D Structure modeling of alpha-amino acid ester hydrolase from Xanthomonas rubrilineans

Zarubina, S.A.; Uporov, I.V.; Fedorchuk, E.A.; Fedorchuk, V.V.; Sklyarenko, A.V.; Yarotsky, S.V.; Tishkov, V.I.

Информация о цитировании статьи получена из Web of Science
Статья опубликована в журнале из перечня ВАК
Статья опубликована в журнале из списка Web of Science и/или Scopus
Дата последнего поиска статьи во внешних источниках: 28 мая 2015 г.

Авторы: Zarubina S.A., Uporov I.V., Fedorchuk E.A., Fedorchuk V.V., Sklyarenko A.V., Yarotsky S.V., Tishkov V.I.
Журнал: Acta Naturae (англоязычная версия)
Том: 5
Номер: 4(19)
Год издания: 2013
Издательство: Park Media Ltd
Местоположение издательства: Moscow, Russia (Federation)
Первая страница: 62
Последняя страница: 70
Аннотация: Alpha-amino acid ester hydrolase (EC 3.1.1.43, AEH) is a promising biocatalyst for the production of semi-synthetic β-lactam antibiotics, penicillins and cephalosporins. The AEH gene from Xantomonas rubrilineans (XrAEH) was recently cloned in this laboratory. The three-dimensional structure of XrAEH was simulated using the homology modeling method for rational design experiments. The analysis of the active site was performed, and its structure was specified. The key amino acid residues in the active site — the catalytic triad (Ser175, His341 and Asp308), oxyanion hole (Tyr83 and Tyr176), and carboxylate cluster (carboxylate groups of Asp209, Glu310 and Asp311) — were identified. It was shown that the optimal configuration of residues in the active site occurs with a negative net charge –1 in the carboxylate cluster. Docking of different substrates in the AEH active site was carried out, which allowed us to obtain structures of XrAEH complexes with the ampicillin, amoxicillin, cephalexin, D-phenylglycine, and 4-hydroxy-D-phenylglycine methyl ester. Modeling of XrAEH enzyme complexes with various substrates was used to show the structures for whose synthesis this enzyme will show the highest efficiency.
Добавил в систему: Тишков Владимир Иванович

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3D Structure modeling of alpha-amino acid ester hydrolase from Xanthomonas rubrilineansстатья

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