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Urzhumtsev Alexandre G.
Соавторы:
Лунин В.Ю.
,
Лунина Н.Л.
,
Podjarny A.D.
,
Afonine P.V.
,
Skovoroda T.P.
,
Vernoslova E.A.
,
Петрова Т.Е.
,
Baumstark M.W.
,
Adams P.D.
,
Fokine A.
,
Fomenkova N.P.
,
Urzhumtseva L.
,
Yusupova G.
показать полностью...
,
Юсупов М.М.
,
Arturs S.
,
BRAZHNIKOV E.
,
Ben-Shem A.
,
Berg A.
,
Blanchard S.
,
Bockmayr A.
,
Bockmayr A.
,
Buehler A.
,
Chirgadze Y.U.
,
Diederichs K.
,
Dinman J.D.
,
Djumagulov M.
,
Ferguson A.
,
Frey I.
,
Grosse-Kunstleve R.W.
,
Heinemann U.
,
Masse J.P.
,
Melnikov S.A.
,
Muzet N.
,
Müller J.J.
,
Nevskaya N.
,
Nevskaya N.A.
,
Petrova T.E.
,
Ritter S.
,
Samama J.
,
Sergeev Y.U.
,
Shrestha S.
,
Terwilliger T.C.
,
Weckert E.
,
de Loubresse N.G.
,
Калита
,
Лузянина Т.Б.
,
Никонов С.В.
,
Прохорова И.Г.
,
Тука И.К.
,
Чиргадзе Ю.Н.
37 статей
Количество цитирований статей в журналах по данным Web of Science: 738, Scopus: 688
IstinaResearcherID (IRID): 205873898
Деятельность
Статьи в журналах
2022
Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography
Urzhumtsev Alexandre
,
Lunin Vladimir Y.
в журнале
International Union of Crystallography Journal
, том 9, № 6
DOI
2022
Toward Real Real-Space Refinement of Atomic Models
Urzhumtsev Alexandre G.
,
Lunin Vladimir Y.
в журнале
International Journal of Molecular Sciences
, издательство
MDPI
(Basel, Switzerland)
, том 23, № 20
DOI
2019
Introduction to crystallographic refinement of macromolecular atomic models
Urzhumtsev Alexandre G.
,
Lunin Vladimir Y.
в журнале
Crystallography Reviews
, издательство
Taylor & Francis
(United Kingdom)
, том 25, № 3, с. 164-262
DOI
2019
Introduction to crystallographic refinement of macromolecular atomic models. Addendum
Urzhumtsev Alexandre G.
,
Lunin Vladimir Y.
в журнале
Crystallography Reviews
, издательство
Taylor & Francis
(United Kingdom)
, том 26, № 1, с. 51-55
DOI
2019
Mask-based approach to phasing of single-particle diffraction data. II. Likelihood-based selection criteria
Lunin Vladimir Y.
,
Lunina Natalia L.
,
Petrova Tatiana E.
,
Baumstark Manfred W.
,
Urzhumtsev Alexandre G.
в журнале
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
, том 75, № 1, с. 79-89
DOI
2017
Aminoglycoside interactions and impacts on the eukaryotic ribosome
Prokhorova Irina
,
Altman Roger B.
,
Djumagulov Muminjon
,
Shrestha Jaya P.
,
Urzhumtsev Alexandre
,
Ferguson Angelica
,
Chang Cheng-Wei Tom
,
Yusupov Marat
,
Blanchard Scott C.
,
Yusupova Gulnara
в журнале
Proceedings of the National Academy of Sciences of the United States of America
, издательство
National Academy of Sciences
(United States)
, том 114, № 51, с. E10899-E10908
DOI
2016
Mask-based approach to phasing of single-particle diffraction data
Lunin Vladimir Y.
,
Lunina Natalia L.
,
Petrova Tatiana E.
,
Baumstark Manfred W.
,
Urzhumtsev Alexandre G.
в журнале
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
, том 72, № 1, с. 147-157
DOI
2014
Metrics for comparison of crystallographic maps
Urzhumtsev Alexandre
,
Afonine Pavel V.
,
Lunin Vladimir Y.
,
Terwilliger Thomas C.
,
Adams Paul D.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 70, № 10, с. 2593-2606
DOI
2012
Crystal structure of the 80S yeast ribosome
Jenner Lasse
,
Melnikov Sergey
,
de Loubresse Nicolas Garreau
,
Ben-Shem Adam
, Iskakova Madina,
Urzhumtsev Alexandre
,
Meskauskas Arturas
,
Dinman Jonathan
,
Yusupova Gulnara
,
Yusupov Marat
в журнале
Current Opinion in Structural Biology
, издательство
Elsevier BV
(Netherlands)
, том 22, № 6, с. 759-767
2009
Cluster analysis for phasing with molecular replacement: a feasibility study
Buehler Andreas
,
Urzhumtseva Ludmila
,
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 65, № 7, с. 644-650
DOI
2007
On macromolecular refinement at subatomic resolution with interatomic scatterers
Afonine Pavel V.
,
Grosse-Kunstleve Ralf W.
,
Adams Paul D.
,
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 63, № 11, с. 1194-1197
DOI
2006
Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2
Müller Jürgen J.
,
Lunina Natalia L.
,
Urzhumtsev Alexandre
,
Weckert Edgar
,
Heinemann Udo
,
Lunin Vladimir Y.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 62, № 5, с. 533-540
DOI
2004
Ab initio phasing based on topological restraints: automated determination of the space group and the number of molecules in the unit cell
Urzhumtseva Ludmila
,
Lunina Natalia
,
Fokine Andrei
,
Samama Jean-Pierre
,
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 60, № 9, с. 1519-1526
DOI
2004
On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps
Afonine Pavel V.
,
Lunin Vladimir Y.
,
Muzet Nicolas
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 60, № 2, с. 260-274
DOI
2004
The use of dummy atoms in X-ray macromolecular crystallography
Urzhumtsev A.
,
Lunin V.Y.
в журнале
Crystallography Reviews
, издательство
Taylor & Francis
(United Kingdom)
, том 10, № 4, с. 319-343
DOI
2003
Connectivity-based ab initio phasing at different solvent levels
Fokine Andrei
,
Lunina Natalia
,
Lunin Vladimir
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 59, № 5, с. 850-858
DOI
2003
Connectivity-based ab initio phasing: from low resolution to a secondary structure
Lunina Natalia
,
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 59, № 10, с. 1702-1715
DOI
2003
MLMF: least-squares approximation of likelihood-based refinement criteria
Afonine Pavel
,
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
в журнале
Journal of Applied Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 36, № 1, с. 158-159
DOI
2002
Ab initio phasing starting from low resolution
Lunin V.Y.
,
Lunina N.
,
Podjarny A.
,
Bockmayr A.
,
Urzhumtsev A.
в журнале
Zeitschfrift für Kristallographie
, издательство
R. Oldenbourg
(Germany)
, том 217, № 12
DOI
2002
Direct phasing by binary integer programming
Lunin Vladimir Y.
,
Urzhumtsev Alexandre
,
Bockmayr Alexander
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 58, № 3, с. 283-291
DOI
2002
Likelihood-based refinement. I. Irremovable model errors
Lunin V.Y.
,
Afonine P.V.
,
Urzhumtsev A.G.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 58, № 3, с. 270-282
DOI
2001
Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives
Urzhumtsev Alexandre G.
,
Lunin Vladimir Y.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 57, № 4, с. 451-460
DOI
2001
Low-resolution data analysis for low-density lipoprotein particle
Lunin Vladimir Y.
,
Lunina Natalia L.
,
Ritter Stephan
,
Frey Ingrid
,
Berg Aloys
,
Diederichs Kay
,
Podjarny Alberto D.
,
Urzhumtsev Alexandre
,
Baumstark Manfred W.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 57, № 1, с. 108-121
DOI
2000
Connectivity properties of high-density regions and ab initio phasing at low resolution
Lunin Vladimir Y.
,
Lunina Natalia L.
,
Urzhumtsev Alexandre G.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 56, № 4, с. 375-382
DOI
2000
Density constraints and low-resolution phasing
Urzhumtsev Alexandre G.
,
Lunina Natalia L.
,
Skovoroda Tatiana P.
,
Podjarny Alberto D.
,
Lunin Vladimir Y.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 56, № 10, с. 1233-1244
DOI
2000
Low-resolution ab initio phasing: problems and advances
Lunin Vladimir Y.
,
Lunina Natalia L.
,
Petrova Tatiana E.
,
Skovoroda Tatiana P.
,
Urzhumtsev Alexandre G.
,
Podjarny Alberto D.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 56, № 10, с. 1223-1232
DOI
1999
Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing
Lunin V.Y.
,
Lunina N.L.
,
Urzhumtsev A.G.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 55, № 5, с. 916-925
DOI
1998
On the Ab Initio Solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination
Lunin V.Y.
,
Lunina N.L.
,
Petrova T.E.
,
Urzhumtsev A.G.
,
Podjarny A.D.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 54, № 5, с. 726-734
DOI
1996
A procedure compatible withX-PLORfor the calculation of electron-density maps weighted using anR-free-likelihood approach
Urzhumtsev A.G.
,
Skovoroda T.P.
,
Lunin V.Y.
в журнале
Journal of Applied Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 29, № 6, с. 741-744
DOI
1995
On the ab initio solution of the phase problem for macromolecules at very low resolution: the few atoms model method
Lunin V.Yu
,
Lunina N.L.
,
Petrova T.E.
,
Vernoslova E.A.
,
Urzhumtsev A.G.
,
Podjarny A.D.
в журнале
Acta Crystallographica Section D: Biological Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 51, № 6, с. 896-903
DOI
1991
Crystal structure of calf eye lens gamma-crystallin IIIb at 2.5 A resolution: Its relation to function
Chirgadze Y.U.
,
Nevskaya N.
,
Vernoslova E.
,
Nikonov S.
,
Sergeev Y.U.
,
Brazhnikov E.
,
Fomenkova N.
,
Lunin V.
,
Urzhumtsev A.
в журнале
Experimental Eye Research
, издательство
Academic Press
(United States)
, том 53, № 3, с. 295-304
DOI
1990
Direct low-resolution phasing from electron-density histograms in protein crystallography
Lunin V.Yu
,
Urzhumtsev A.G.
,
Skovoroda T.P.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 46, № 7, с. 540-544
DOI
1989
Bounding a molecule in a noisy synthesis
Urzhumtsev A.G.
,
Lunin V.Yu
,
Luzyanina T.B.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 45, № 1, с. 34-39
DOI
1989
FROG– high-speed restraint–constraint refinement program for macromolecular structure
Urzhumtsev A.G.
,
Lunin V.Yu
,
Vernoslova E.A.
в журнале
Journal of Applied Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 22, № 5, с. 500-506
DOI
1985
Phase improvement in protein crystallography using a mixed electron density model
Lunin V.Yu
,
Urzhumtsev A.G.
,
Vernoslova E.A.
,
Chirgadze Yu N.
,
Neveskaya N.A.
,
Fomenkova N.P.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 41, № 2, с. 166-171
DOI
1985
Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms
Lunin V.Yu
,
Urzhumtsev A.G.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 41, № 4, с. 327-333
DOI
1984
Improvement of protein phases by coarse model modification
Lunin V.Yu
,
Urzhumtsev A.G.
в журнале
Acta Crystallographica Section A: Foundations of Crystallography
, издательство
Blackwell Publishing Inc.
(United Kingdom)
, том 40, № 3, с. 269-277
DOI