ИСТИНА

Urzhumtsev Alexandre G.

Соавторы: Лунин В.Ю., Лунина Н.Л., Podjarny A.D., Afonine P.V., Skovoroda T.P., Vernoslova E.A., Петрова Т.Е., Baumstark M.W., Adams P.D., Fokine A., Fomenkova N.P., Urzhumtseva L., Yusupova G. показать полностью..., Юсупов М.М., Arturs S., BRAZHNIKOV E., Ben-Shem A., Berg A., Blanchard S., Bockmayr A., Bockmayr A., Buehler A., Chirgadze Y.U., Diederichs K., Dinman J.D., Djumagulov M., Ferguson A., Frey I., Grosse-Kunstleve R.W., Heinemann U., Masse J.P., Melnikov S.A., Muzet N., Müller J.J., Nevskaya N., Nevskaya N.A., Petrova T.E., Ritter S., Samama J., Sergeev Y.U., Shrestha S., Terwilliger T.C., Weckert E., de Loubresse N.G., Калита, Лузянина Т.Б., Никонов С.В., Прохорова И.Г., Тука И.К., Чиргадзе Ю.Н.

37 статей

Количество цитирований статей в журналах по данным Web of Science: 738, Scopus: 688

IstinaResearcherID (IRID): 205873898

Деятельность

• Статьи в журналах

  • • 2022 Analytic modeling of inhomogeneous-resolution maps in cryo-electron microscopy and crystallography
    • Urzhumtsev Alexandre, Lunin Vladimir Y.
    • в журнале International Union of Crystallography Journal, том 9, № 6 DOI
  • • 2022 Toward Real Real-Space Refinement of Atomic Models
    • Urzhumtsev Alexandre G., Lunin Vladimir Y.
    • в журнале International Journal of Molecular Sciences, издательство MDPI (Basel, Switzerland), том 23, № 20 DOI
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    • 2019 Introduction to crystallographic refinement of macromolecular atomic models
    • Urzhumtsev Alexandre G., Lunin Vladimir Y.
    • в журнале Crystallography Reviews, издательство Taylor & Francis (United Kingdom), том 25, № 3, с. 164-262 DOI
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    • 2019 Introduction to crystallographic refinement of macromolecular atomic models. Addendum
    • Urzhumtsev Alexandre G., Lunin Vladimir Y.
    • в журнале Crystallography Reviews, издательство Taylor & Francis (United Kingdom), том 26, № 1, с. 51-55 DOI
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    • 2019 Mask-based approach to phasing of single-particle diffraction data. II. Likelihood-based selection criteria
    • Lunin Vladimir Y., Lunina Natalia L., Petrova Tatiana E., Baumstark Manfred W., Urzhumtsev Alexandre G.
    • в журнале ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, том 75, № 1, с. 79-89 DOI
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    • 2017 Aminoglycoside interactions and impacts on the eukaryotic ribosome
    • Prokhorova Irina, Altman Roger B., Djumagulov Muminjon, Shrestha Jaya P., Urzhumtsev Alexandre, Ferguson Angelica, Chang Cheng-Wei Tom, Yusupov Marat, Blanchard Scott C., Yusupova Gulnara
    • в журнале Proceedings of the National Academy of Sciences of the United States of America, издательство National Academy of Sciences (United States), том 114, № 51, с. E10899-E10908 DOI
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    • 2016 Mask-based approach to phasing of single-particle diffraction data
    • Lunin Vladimir Y., Lunina Natalia L., Petrova Tatiana E., Baumstark Manfred W., Urzhumtsev Alexandre G.
    • в журнале ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, том 72, № 1, с. 147-157 DOI
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    • 2014 Metrics for comparison of crystallographic maps
    • Urzhumtsev Alexandre, Afonine Pavel V., Lunin Vladimir Y., Terwilliger Thomas C., Adams Paul D.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 70, № 10, с. 2593-2606 DOI
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    • 2012 Crystal structure of the 80S yeast ribosome
    • Jenner Lasse, Melnikov Sergey, de Loubresse Nicolas Garreau, Ben-Shem Adam, Iskakova Madina, Urzhumtsev Alexandre, Meskauskas Arturas, Dinman Jonathan, Yusupova Gulnara, Yusupov Marat
    • в журнале Current Opinion in Structural Biology, издательство Elsevier BV (Netherlands), том 22, № 6, с. 759-767
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    • 2009 Cluster analysis for phasing with molecular replacement: a feasibility study
    • Buehler Andreas, Urzhumtseva Ludmila, Lunin Vladimir Y., Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 65, № 7, с. 644-650 DOI
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    • 2007 On macromolecular refinement at subatomic resolution with interatomic scatterers
    • Afonine Pavel V., Grosse-Kunstleve Ralf W., Adams Paul D., Lunin Vladimir Y., Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 63, № 11, с. 1194-1197 DOI
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    • 2006 Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2
    • Müller Jürgen J., Lunina Natalia L., Urzhumtsev Alexandre, Weckert Edgar, Heinemann Udo, Lunin Vladimir Y.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 62, № 5, с. 533-540 DOI
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    • 2004 Ab initio phasing based on topological restraints: automated determination of the space group and the number of molecules in the unit cell
    • Urzhumtseva Ludmila, Lunina Natalia, Fokine Andrei, Samama Jean-Pierre, Lunin Vladimir Y., Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 60, № 9, с. 1519-1526 DOI
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    • 2004 On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps
    • Afonine Pavel V., Lunin Vladimir Y., Muzet Nicolas, Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 60, № 2, с. 260-274 DOI
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    • 2004 The use of dummy atoms in X-ray macromolecular crystallography
    • Urzhumtsev A., Lunin V.Y.
    • в журнале Crystallography Reviews, издательство Taylor & Francis (United Kingdom), том 10, № 4, с. 319-343 DOI
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    • 2003 Connectivity-based ab initio phasing at different solvent levels
    • Fokine Andrei, Lunina Natalia, Lunin Vladimir, Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 59, № 5, с. 850-858 DOI
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    • 2003 Connectivity-based ab initio phasing: from low resolution to a secondary structure
    • Lunina Natalia, Lunin Vladimir Y., Urzhumtsev Alexandre
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 59, № 10, с. 1702-1715 DOI
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    • 2003 MLMF: least-squares approximation of likelihood-based refinement criteria
    • Afonine Pavel, Lunin Vladimir Y., Urzhumtsev Alexandre
    • в журнале Journal of Applied Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 36, № 1, с. 158-159 DOI
  • • 2002 Ab initio phasing starting from low resolution
    • Lunin V.Y., Lunina N., Podjarny A., Bockmayr A., Urzhumtsev A.
    • в журнале Zeitschfrift für Kristallographie, издательство R. Oldenbourg (Germany), том 217, № 12 DOI
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    • 2002 Direct phasing by binary integer programming
    • Lunin Vladimir Y., Urzhumtsev Alexandre, Bockmayr Alexander
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 58, № 3, с. 283-291 DOI
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    • 2002 Likelihood-based refinement. I. Irremovable model errors
    • Lunin V.Y., Afonine P.V., Urzhumtsev A.G.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 58, № 3, с. 270-282 DOI
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    • 2001 Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives
    • Urzhumtsev Alexandre G., Lunin Vladimir Y.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 57, № 4, с. 451-460 DOI
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    • 2001 Low-resolution data analysis for low-density lipoprotein particle
    • Lunin Vladimir Y., Lunina Natalia L., Ritter Stephan, Frey Ingrid, Berg Aloys, Diederichs Kay, Podjarny Alberto D., Urzhumtsev Alexandre, Baumstark Manfred W.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 57, № 1, с. 108-121 DOI
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    • 2000 Connectivity properties of high-density regions and ab initio phasing at low resolution
    • Lunin Vladimir Y., Lunina Natalia L., Urzhumtsev Alexandre G.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 56, № 4, с. 375-382 DOI
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    • 2000 Density constraints and low-resolution phasing
    • Urzhumtsev Alexandre G., Lunina Natalia L., Skovoroda Tatiana P., Podjarny Alberto D., Lunin Vladimir Y.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 56, № 10, с. 1233-1244 DOI
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    • 2000 Low-resolution ab initio phasing: problems and advances
    • Lunin Vladimir Y., Lunina Natalia L., Petrova Tatiana E., Skovoroda Tatiana P., Urzhumtsev Alexandre G., Podjarny Alberto D.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 56, № 10, с. 1223-1232 DOI
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    • 1999 Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing
    • Lunin V.Y., Lunina N.L., Urzhumtsev A.G.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 55, № 5, с. 916-925 DOI
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    • 1998 On the Ab Initio Solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination
    • Lunin V.Y., Lunina N.L., Petrova T.E., Urzhumtsev A.G., Podjarny A.D.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 54, № 5, с. 726-734 DOI
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    • 1996 A procedure compatible withX-PLORfor the calculation of electron-density maps weighted using anR-free-likelihood approach
    • Urzhumtsev A.G., Skovoroda T.P., Lunin V.Y.
    • в журнале Journal of Applied Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 29, № 6, с. 741-744 DOI
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    • 1995 On the ab initio solution of the phase problem for macromolecules at very low resolution: the few atoms model method
    • Lunin V.Yu, Lunina N.L., Petrova T.E., Vernoslova E.A., Urzhumtsev A.G., Podjarny A.D.
    • в журнале Acta Crystallographica Section D: Biological Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 51, № 6, с. 896-903 DOI
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    • 1991 Crystal structure of calf eye lens gamma-crystallin IIIb at 2.5 A resolution: Its relation to function
    • Chirgadze Y.U., Nevskaya N., Vernoslova E., Nikonov S., Sergeev Y.U., Brazhnikov E., Fomenkova N., Lunin V., Urzhumtsev A.
    • в журнале Experimental Eye Research, издательство Academic Press (United States), том 53, № 3, с. 295-304 DOI
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    • 1990 Direct low-resolution phasing from electron-density histograms in protein crystallography
    • Lunin V.Yu, Urzhumtsev A.G., Skovoroda T.P.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 46, № 7, с. 540-544 DOI
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    • 1989 Bounding a molecule in a noisy synthesis
    • Urzhumtsev A.G., Lunin V.Yu, Luzyanina T.B.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 45, № 1, с. 34-39 DOI
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    • 1989 FROG– high-speed restraint–constraint refinement program for macromolecular structure
    • Urzhumtsev A.G., Lunin V.Yu, Vernoslova E.A.
    • в журнале Journal of Applied Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 22, № 5, с. 500-506 DOI
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    • 1985 Phase improvement in protein crystallography using a mixed electron density model
    • Lunin V.Yu, Urzhumtsev A.G., Vernoslova E.A., Chirgadze Yu N., Neveskaya N.A., Fomenkova N.P.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 41, № 2, с. 166-171 DOI
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    • 1985 Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms
    • Lunin V.Yu, Urzhumtsev A.G.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 41, № 4, с. 327-333 DOI
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    • 1984 Improvement of protein phases by coarse model modification
    • Lunin V.Yu, Urzhumtsev A.G.
    • в журнале Acta Crystallographica Section A: Foundations of Crystallography, издательство Blackwell Publishing Inc. (United Kingdom), том 40, № 3, с. 269-277 DOI